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The Megadata of Lake Mendota - Part 1: Many, Many Mers

The Megadata of Lake Mendota - Part 1: Many, Many Mers

FromGenome Insider


The Megadata of Lake Mendota - Part 1: Many, Many Mers

FromGenome Insider

ratings:
Length:
26 minutes
Released:
Nov 21, 2023
Format:
Podcast episode

Description

Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works. So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together. The next 3 episodes are the story behind that giant assembly from Lake Mendota. In this episode: the software evolution that made metagenome assemblies like this possible.Links from this episode:Submit your own proposal to work with the JGIEpisode TranscriptThe JGI’s Metagenome ProgramMetaHipMerThe ExaBiome ProjectPaper: Hofmeyr, S., Egan, R., Georganas, E. et al. Terabase-scale metagenome coassembly with MetaHipMer. Sci Rep 10, 10689 (2020). https://doi.org/10.1038/s41598-020-67416-5 Our contact info:Twitter: @JGIEmail: jgi-comms at lbl dot gov
Released:
Nov 21, 2023
Format:
Podcast episode

Titles in the series (45)

Stories where genes and genomes are key to solving energy and environment challenges. Hear diverse voices in science talk about their groundbreaking research to better understand — and harness — the superpowers encoded in plants, fungi, microalgae, environmental viruses, and bacteria to contribute to a more sustainable world. Join host Alison F. Takemura, PhD, for regular episodes to get an intimate look at the life around us.