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The Megadata of Lake Mendota - Part 2: Souped Up Computing

The Megadata of Lake Mendota - Part 2: Souped Up Computing

FromGenome Insider


The Megadata of Lake Mendota - Part 2: Souped Up Computing

FromGenome Insider

ratings:
Length:
22 minutes
Released:
Dec 7, 2023
Format:
Podcast episode

Description

This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2.Oak Ridge National Lab is home to two supercomputers — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research Scientific Computing (NERSC) has another supercomputer, Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running smaller assemblies — so we head there for a sense of what this supercomputing looks like.Links from this episode:Submit your own proposal to work with the JGIEpisode TranscriptRobert Riley at the 2016 DOE JGI Genomics of Energy & Environment MeetingMetaHipMerThe ExaBiome ProjectOur contact info:Twitter: @JGIEmail: jgi-comms at lbl dot gov
Released:
Dec 7, 2023
Format:
Podcast episode

Titles in the series (45)

Stories where genes and genomes are key to solving energy and environment challenges. Hear diverse voices in science talk about their groundbreaking research to better understand — and harness — the superpowers encoded in plants, fungi, microalgae, environmental viruses, and bacteria to contribute to a more sustainable world. Join host Alison F. Takemura, PhD, for regular episodes to get an intimate look at the life around us.