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#12 Biostatistics and Differential Equations, with Demetri Pananos

#12 Biostatistics and Differential Equations, with Demetri Pananos

FromLearning Bayesian Statistics


#12 Biostatistics and Differential Equations, with Demetri Pananos

FromLearning Bayesian Statistics

ratings:
Length:
47 minutes
Released:
Mar 25, 2020
Format:
Podcast episode

Description

Do you know Google Summer of Code? It’s a time of year when students can contribute to open-source software by developing and adding much needed functionalities to the open-source package of their choice. And Demetri Pananos did just that.
He did it in 2019 with PyMC3, for which he developed the API for ordinary differential equations. In this episode, he’ll tell us why and how he did that, what he learned from the experience, and what the strengths and weaknesses of the API are in his opinion.
Demetri is a Ph.D candidate in Biostatistics at Western University, in Ontario, Canada. His research interests surround machine learning and Bayesian statistics for personalized medicine. He earned his Master’s in Applied Mathematics from The University of Waterloo and is a firm believer in open science, interdisciplinary collaboration, and reproducible research. 
Other than that, he loves plotting data and drinking IPA beer – well, who doesn’t?”
Our theme music is « Good Bayesian », by Baba Brinkman (feat MC Lars and Mega Ran). Check out his awesome work at https://bababrinkman.com/ (https://bababrinkman.com/) !
Links from the show:
Demetri on Twitter: https://twitter.com/PhDemetri (https://twitter.com/PhDemetri)
Demetri on GitHub: https://github.com/Dpananos (https://github.com/Dpananos)
Demetri's website: https://dpananos.github.io/ (https://dpananos.github.io/)
PyMC3, Probabilistic Programming in Python: https://docs.pymc.io/ (https://docs.pymc.io/)
Chris Bishop, Pattern Recognition and Machine Learning: https://www.amazon.fr/Pattern-Recognition-Machine-Learning-Christopher/dp/0387310738 (https://www.amazon.fr/Pattern-Recognition-Machine-Learning-Christopher/dp/0387310738)
Bayesian Data Analysis (Gelman, Carlin, Stern, Dunson, Vehtari, Rubin): http://www.stat.columbia.edu/~gelman/book/ (http://www.stat.columbia.edu/~gelman/book/)
Parallel Plots: https://arviz-devs.github.io/arviz/generated/arviz.plot_parallel.html (https://arviz-devs.github.io/arviz/generated/arviz.plot_parallel.html)



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Released:
Mar 25, 2020
Format:
Podcast episode

Titles in the series (100)

Are you a researcher or data scientist / analyst / ninja? Do you want to learn Bayesian inference, stay up to date or simply want to understand what Bayesian inference is? Then this podcast is for you! You'll hear from researchers and practitioners of all fields about how they use Bayesian statistics, and how in turn YOU can apply these methods in your modeling workflow. When I started learning Bayesian methods, I really wished there were a podcast out there that could introduce me to the methods, the projects and the people who make all that possible. So I created "Learning Bayesian Statistics", where you'll get to hear how Bayesian statistics are used to detect black matter in outer space, forecast elections or understand how diseases spread and can ultimately be stopped. But this show is not only about successes -- it's also about failures, because that's how we learn best. So you'll often hear the guests talking about what *didn't* work in their projects, why, and how they overcame these challenges. Because, in the end, we're all lifelong learners! My name is Alex Andorra by the way, and I live in Paris. By day, I'm a data scientist and modeler at the https://www.pymc-labs.io/ (PyMC Labs) consultancy. By night, I don't (yet) fight crime, but I'm an open-source enthusiast and core contributor to the python packages https://docs.pymc.io/ (PyMC) and https://arviz-devs.github.io/arviz/ (ArviZ). I also love https://www.pollsposition.com/ (election forecasting) and, most importantly, Nutella. But I don't like talking about it – I prefer eating it. So, whether you want to learn Bayesian statistics or hear about the latest libraries, books and applications, this podcast is for you -- just subscribe! You can also support the show and https://www.patreon.com/learnbayesstats (unlock exclusive Bayesian swag on Patreon)! This podcast uses the following third-party services for analysis: Podcorn - https://podcorn.com/privacy